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Organoids

Holotomography enables label-free, non-invasive 3D imaging of complex biological models—organoids, spheroids, microphysiology systems, and organ-on-a-chip devices. Unlike conventional fluorescence microscopy, holotomography measures refractive index distributions to visualize cellular structures without staining or genetic modification. This preserves the natural state of living samples and eliminates concerns about phototoxicity, photobleaching, and label-induced artifacts.

By maintaining sample integrity, researchers can perform continuous observation for over days, capturing complete developmental trajectories from initial seeding through full maturation. The technology delivers quantitative morphological data—including cell volume, dry mass, and density—through automated analysis pipelines. With high-throughput capability to process 96-well plates in under 30 minutes, holotomography bridges the gap between detailed single-cell analysis and large-scale screening workflows.

From basic research to pharmaceutical drug screening and precision medicine applications, holotomography provides the reproducible, unbiased imaging data needed to advance 3D cell biology. The technology supports New Approach Methodologies (NAMs) aligned with 3Rs principles, enabling more predictive in vitro models while reducing reliance on animal testing.

Features

  • Larger Field-of-View
    Label-free live cell imaging
    Holotomography (HT) imaging eliminates the need for labeling or dyeing, therefore minimizing artificial manipulation effects and simplifying sample preparation. This approach allows the observation of samples in their natural state, providing more reliable and relevant information.
  • Larger Field-of-View
    High-resolution 3D imaging
    HT provides high-content, high-resolution, three-dimensional images, allowing researchers to capture detailed information about cellular structures. This high level of detail is crucial for studying cellular morphology and dynamics.
  • Larger Field-of-View
    Long-term timelapse imaging
    HT facilitates continuous monitoring of cellular phenomena over extended time frames. This feature is beneficial for studying processes that unfold over hours, days, or even weeks, providing a comprehensive understanding of long-term cellular behavior.
  • Larger Field-of-View
    Quantitative analysis
    HT allows for quantitative analysis of cellular parameters. It can measure physical quantities such as mean refractive index,dry mass, and concentration, as well as various shape measurements like area,length, volume, and surface area.

Discover Organoids with HT

  • Organoids: Miniature Organs for Advanced Research

    Research on organoids, the 3D cell aggregates replicating organ structures and functions, benefits significantly from the detailed and noninvasive imaging capabilities of Holotomography (HT). HT efficiently captures the dynamic behavior of cells within living organoids, including mitotic events, cyst formation, and crypt budding. Real-time, high-resolution observations with available quantitative measurements facilitated by HT are crucial for exploring the complex dynamics and morphology of the organoids.

    In combination with the HT-ready 96-well plate, which supports a broad spectrum of cell types from 2D to 3D cultures, the HT-X1 is an ideal tool for leveraging the potential of organoids in drug development. It enables high-throughput screenings for rapid assessment of drug response and its toxicity on patient-derived tissues.

    A recent study highlighted a successful example of such efforts, demonstrating how HT has set a new standard for comprehensive and rigorous statistical assessments for the biological studies of organoids (Lee et al., 2023). With HT, intricate subcellular structures of individual cells in small intestinal organoids were observed in intricate detail. Long-term monitoring of various biological processes within the specimen, including cell mitosis, migration, apoptosis, and other subcellular dynamics, was achieved effortlessly without the need for labeling or other time-consuming preparations.

    Additionally, the observation of morphological changes was combined with quantitative parameters, including organoid volume, protein concentration, and mass, to effectively and comprehensively evaluate the response of the organoids to chemotherapy drug treatments. The study suggested that the Tomocube HT-X1 imaging system is an indispensable tool for organoid-based pharmacological screening applications.

  • Microphysiology Systems & Organ-on-a-Chip

    Bridging the Gap Between in vitro and in vivo

    Microphysiology systems (MPS) and organ-on-a-chip devices represent the next evolution in physiologically relevant cell culture models. These microfluidic platforms recreate tissue-tissue interfaces, mechanical forces, and fluid flow conditions that are impossible to achieve in static cultures.

    Why do traditional imaging methods fall short for MPS? 
    Organ-on-a-chip devices present unique imaging requirements:

    • Continuous flow systems cannot tolerate fixation or staining protocols
    • Scaffold materials often exhibit autofluorescence
    • Multi-layer architectures require true 3D imaging capability
    • Real-time monitoring is essential for dynamic studies


    What advantages does holotomography offer?
    Holotomography is uniquely suited for MPS imaging because it requires no sample preparation that would disrupt the carefully controlled microenvironment:

    • Non-invasive observation: Image cells on collagen scaffolds and hydrogel matrices without interference
    • Real-time monitoring: Track cellular responses to flow conditions and chemical gradients
    • Quantitative analysis: Measure cell morphology, proliferation, and viability continuously
    • Multi-day experiments: Monitor device function over extended culture periods
     

    Common applications include:

    • Liver-on-a-chip for hepatotoxicity screening
    • Gut-on-a-chip for barrier function studies
    • Lung-on-a-chip for inhalation toxicology
    • Vascular chips for endothelial research


    The combination of label-free imaging and quantitative 3D analysis makes holotomography an ideal tool for validating and characterizing microphysiology systems during development and application.

Resources

Selected publications

  • Research team proposed a new lung biopsy technique - cryobiopsy - resulting in a higher success rate for culturing lung cancer organoids (LCOs) while overcoming many critical limitations of conventional organoid models. Low-coherence HT was employed to evaluate the 3D structure and subcellular characteristics of LCOs without any pre-treatment. This proposed methodology promises to be a breakthrough strategy for the clinical application of LCOs in all stages of lung cancer.

  • HT sets a new standard for comprehensive, rigorous statistical assessments for the studies of organoids. With HT, researchers can observe intricate subcellular structures of individual cells in small intestinal organoids and easily perform long-term monitoring of different biological processes as the procedures required no time-consuming preparation or labeling. Observation of morphological changes was combined with quantitative parameters to effectively and comprehensively evaluate the response of the organoids to drug treatment.