Tomocube

TomoAnalysis Viewer is for data review — browsing datasets, exploring 3D structures, and running on-screen measurements such as line profiles and ROI statistics. It also includes Multi View for side-by-side comparison of up to four datasets simultaneously, and a built-in Movie Maker for recording videos with rotation, Z-slice traversal, and time-lapse playback.

TomoAnalysis Viewer does not include advanced analysis features such as AI models, cell segmentation, morphological analysis, or statistical processing. For those capabilities, use TomoAnalysis.

Yes — simply register to activate your license. Enter your name, organization, and email for online activation. No purchase or subscription is required. For restricted network environments, contact info@tomocube.com for an offline activation code.

For analysis features beyond visualization — AI models, segmentation, morphological analysis — use TomoAnalysis, which offers Basic and AI Plus license tiers. An active TomoAnalysis license can also be used to activate TomoAnalysis Viewer.

Download TomoAnalysis Viewer and run the installer on your Windows PC. On first launch, activate online by entering your name, organization, and email. For restricted network environments, contact info@tomocube.com for an offline activation code.

To load data, drag and drop a folder containing TCF (Tomocube Common File) data into the Explorer panel, or select File >Load Sample Data Path to start with the included sample dataset. Double-click any dataset in the Gallery to open it in the Viewer, where you can switch between 2D View, 3D View, Orthogonal View, and Multi View modes to explore your data.

For detailed instructions, refer to the user manual — available under Help > Show Manual in the application.

Click File to open the dropdown, and click Load Sample Data Path. There you will find two sample HT datasets available in your directory.

TomoAnalysis Viewer opens TCF datasets generated by Tomocube HT-series imaging systems. TCF files can contain HT, FL, and brightfield (BF) data, and the Viewer automatically identifies each modality for easy navigation.

For export, TomoAnalysis Viewer supports TIFF and RAW (with MHD) formats. You can select specific modalities, choose whether to include MIP, and define time frame ranges with custom start, end, and interval settings.

Yes. TomoAnalysis Viewer provides six drawing tools for on-screen measurement: Point (count), Line (length in μm), Rectangle, Circle, Polygon, and Lasso (area in μm²).

After drawing an ROI, results appear immediately in the ROI Profile panel:
 

• Line ROI: displays a line profile of RI or FL intensity along the drawn path. Multiple modalities can be plotted together for correlation.
   

• Area ROI (Rectangle, Circle, Polygon, Lasso): displays an intensity histogram for the selected region.
   

• Point ROI: displays a box plot of intensity values.
   

• Multiple ROIs: select two or more ROIs to compare measurements using a bar graph — by count, length, area, or average intensity and standard deviation.
   

ROI lists can be exported as CSV, and ROI profile graphs can be saved as PNG or JPG. For advanced quantitative analysis such as cell segmentation or morphological measurement, use TomoAnalysis.

Yes. TomoAnalysis Viewer supports holotomography, fluorescence, and brightfield modalities. FL channels can be overlaid on HT data for combined visualization, and the Gallery provides thumbnail display modes for each modality — HT, FL, HT+FL, and BF — for quick browsing by modality.
 

Each channel can be adjusted independently: brightness and contrast (manual adjustment or automatic Best Fit), gamma, transparency, and colormap (LUT). In 3D View, FL channels can also be used for Direct Volume Rendering (DVR) alongside HT.

Yes. TomoAnalysis Viewer is built to navigate large HT datasets — including large time-lapse sequences and gigabyte-scale tissue scans — efficiently on supported systems. Browse through hundreds of time points using the timeframe slider, scroll across Z-slices, and switch smoothly between 2D and 3D views.
 

The Gallery supports time-lapse thumbnail preview on hover, and datasets can be organized using favorites and tags. Filters narrow the Gallery by modality, time-lapse, tile, favorite, tag, experiment, well, and acquisition date — so the right dataset is easy to find even in large collections.